Compression of DNA Sequencing Data

Jan Voges

doi:10.51202/9783186878106

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Bibliographic data

Copyright year: 2022
ISBN-Print: 978-3-18-387810-9
ISBN-Online: 978-3-18-687810-6
Publisher: VDI Verlag, Düsseldorf
Series: Informatik/ Kommunikation
Volume: 878
Language: German
Pages: 166
Product type: Book Titles

Titelei/Inhaltsverzeichnis No access Pages I - XVIII
1. Motivation No access
2. 1. Compression of Aligned Reads No access
  2. Compression of Quality Scores No access
  3. Entropy Coding of DNA Sequencing Data No access
  4. Standards and Implementations No access
3. Outline No access
1. The Central Dogma of Molecular Biology No access
2. 1. Basic Methods No access
  2. High-Throughput Methods No access
3. 1. The FASTA Format No access
  2. The FASTQ Format No access
  3. The SAM/BAM Format No access
4. 1. Mathematical Preliminaries No access
  2. Information Theory No access
  3. Modeling No access
  4. Coding No access
  5. Quantization No access
1. 1. Genome Compression No access
  2. Read Compression No access
  3. Compression of Aligned Reads No access
2. TSC Architecture No access
3. Integration of TSC in MPEG-G No access
4. Experiment Setup No access
5. Results and Discussion No access
6. Conclusion No access
1. State of the Art and Contribution No access
2. 1. Genotype Likelihood Model No access
  2. Activity-Based Posterior Model No access
  3. Entropy Coding No access
3. Integration of CALQ in MPEG-G No access
4. Experiment Setup No access
5. Results and Discussion No access
6. Conclusion No access
1. State of the Art and Contribution No access
2. 1. Input Parsing No access
  2. 3-Step Transformation No access
  3. Binarization No access
  4. Context Selection and CABAC No access
3. 1. Entropy Coding Methods No access
  2. Test Data No access
4. Results and Discussion No access
5. Conclusion No access
1. The Standardization Landscape No access
2. 1. Transport and Storage of Genomic Information No access
  2. Coding of Genomic Information No access
  3. Metadata and Application Programming Interfaces No access
  4. Reference Software and Conformance No access
3. An Open-Source MPEG-G Codec No access
Conclusions No access Pages 129 - 132
Appendix No access Pages 133 - 133
Bibliography No access Pages 133 - 152
Publications No access Pages 153 - 166